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1.

SnapShot: Clinical proteomics.

Zhu, Yi; Aebersold, Ruedi; Mann, Matthias; Guo, Tiannan.

Cell ; 184(18): 4840-4840.e1, 2021 09 02.

Article in English | MEDLINE | ID: mdl-34478659

2.

Disentangling Genetic and Environmental Effects on the Proteotypes of Individuals.

Romanov, Natalie; Kuhn, Michael; Aebersold, Ruedi; Ori, Alessandro; Beck, Martin; Bork, Peer.

Cell ; 177(5): 1308-1318.e10, 2019 05 16.

Article in English | MEDLINE | ID: mdl-31031010

3.

The Chaperonin TRiC/CCT Associates with Prefoldin through a Conserved Electrostatic Interface Essential for Cellular Proteostasis.

Gestaut, Daniel; Roh, Soung Hun; Ma, Boxue; Pintilie, Grigore; Joachimiak, Lukasz A; Leitner, Alexander; Walzthoeni, Thomas; Aebersold, Ruedi; Chiu, Wah; Frydman, Judith.

Cell ; 177(3): 751-765.e15, 2019 04 18.

Article in English | MEDLINE | ID: mdl-30955883

4.

Author Correction: Proteomic and interactomic insights into the molecular basis of cell functional diversity.

Bludau, Isabell; Aebersold, Ruedi.

Nat Rev Mol Cell Biol ; 21(6): 353, 2020 Jun.

Article in English | MEDLINE | ID: mdl-32303723

5.

Proteomic and interactomic insights into the molecular basis of cell functional diversity.

Bludau, Isabell; Aebersold, Ruedi.

Nat Rev Mol Cell Biol ; 21(6): 327-340, 2020 06.

Article in English | MEDLINE | ID: mdl-32235894

6.

A Class of Environmental and Endogenous Toxins Induces BRCA2 Haploinsufficiency and Genome Instability.

Tan, Shawn Lu Wen; Chadha, Saakshi; Liu, Yansheng; Gabasova, Evelina; Perera, David; Ahmed, Karim; Constantinou, Stephanie; Renaudin, Xavier; Lee, MiYoung; Aebersold, Ruedi; Venkitaraman, Ashok R.

Cell ; 169(6): 1105-1118.e15, 2017 Jun 01.

Article in English | MEDLINE | ID: mdl-28575672

7.

On the Dependency of Cellular Protein Levels on mRNA Abundance.

Liu, Yansheng; Beyer, Andreas; Aebersold, Ruedi.

Cell ; 165(3): 535-50, 2016 Apr 21.

Article in English | MEDLINE | ID: mdl-27104977

8.

Insertion of the Biogenesis Factor Rei1 Probes the Ribosomal Tunnel during 60S Maturation.

Greber, Basil Johannes; Gerhardy, Stefan; Leitner, Alexander; Leibundgut, Marc; Salem, Michèle; Boehringer, Daniel; Leulliot, Nicolas; Aebersold, Ruedi; Panse, Vikram Govind; Ban, Nenad.

Cell ; 164(1-2): 91-102, 2016 Jan 14.

Article in English | MEDLINE | ID: mdl-26709046

9.

Human SRMAtlas: A Resource of Targeted Assays to Quantify the Complete Human Proteome.

Kusebauch, Ulrike; Campbell, David S; Deutsch, Eric W; Chu, Caroline S; Spicer, Douglas A; Brusniak, Mi-Youn; Slagel, Joseph; Sun, Zhi; Stevens, Jeffrey; Grimes, Barbara; Shteynberg, David; Hoopmann, Michael R; Blattmann, Peter; Ratushny, Alexander V; Rinner, Oliver; Picotti, Paola; Carapito, Christine; Huang, Chung-Ying; Kapousouz, Meghan; Lam, Henry; Tran, Tommy; Demir, Emek; Aitchison, John D; Sander, Chris; Hood, Leroy; Aebersold, Ruedi; Moritz, Robert L.

Cell ; 166(3): 766-778, 2016 Jul 28.

Article in English | MEDLINE | ID: mdl-27453469

10.

The structural basis of substrate recognition by the eukaryotic chaperonin TRiC/CCT.

Joachimiak, Lukasz A; Walzthoeni, Thomas; Liu, Corey W; Aebersold, Ruedi; Frydman, Judith.

Cell ; 159(5): 1042-1055, 2014 Nov 20.

Article in English | MEDLINE | ID: mdl-25416944

11.

Multilayered genetic and omics dissection of mitochondrial activity in a mouse reference population.

Wu, Yibo; Williams, Evan G; Dubuis, Sébastien; Mottis, Adrienne; Jovaisaite, Virginija; Houten, Sander M; Argmann, Carmen A; Faridi, Pouya; Wolski, Witold; Kutalik, Zoltán; Zamboni, Nicola; Auwerx, Johan; Aebersold, Ruedi.

Cell ; 158(6): 1415-1430, 2014 Sep 11.

Article in English | MEDLINE | ID: mdl-25215496

12.

Molecular architecture of the 40SâeIF1âeIF3 translation initiation complex.

Erzberger, Jan P; Stengel, Florian; Pellarin, Riccardo; Zhang, Suyang; Schaefer, Tanja; Aylett, Christopher H S; Cimermancic, Peter; Boehringer, Daniel; Sali, Andrej; Aebersold, Ruedi; Ban, Nenad.

Cell ; 158(5): 1123-1135, 2014 08 28.

Article in English | MEDLINE | ID: mdl-25171412

13.

Multilayered regulation of autophagy by the Atg1 kinase orchestrates spatial and temporal control of autophagosome formation.

Schreiber, Anne; Collins, Ben C; Davis, Colin; Enchev, Radoslav I; Sedra, Angie; D'Antuono, Rocco; Aebersold, Ruedi; Peter, Matthias.

Mol Cell ; 81(24): 5066-5081.e10, 2021 12 16.

Article in English | MEDLINE | ID: mdl-34798055

14.

Molecular architecture of the ATP-dependent chromatin-remodeling complex SWR1.

Nguyen, Vu Q; Ranjan, Anand; Stengel, Florian; Wei, Debbie; Aebersold, Ruedi; Wu, Carl; Leschziner, Andres E.

Cell ; 154(6): 1220-31, 2013 Sep 12.

Article in English | MEDLINE | ID: mdl-24034246

15.

Dual specificity kinase DYRK3 couples stress granule condensation/dissolution to mTORC1 signaling.

Wippich, Frank; Bodenmiller, Bernd; Trajkovska, Maria Gustafsson; Wanka, Stefanie; Aebersold, Ruedi; Pelkmans, Lucas.

Cell ; 152(4): 791-805, 2013 Feb 14.

Article in English | MEDLINE | ID: mdl-23415227

16.

Structure and subunit topology of the INO80 chromatin remodeler and its nucleosome complex.

Tosi, Alessandro; Haas, Caroline; Herzog, Franz; Gilmozzi, Andrea; Berninghausen, Otto; Ungewickell, Charlotte; Gerhold, Christian B; Lakomek, Kristina; Aebersold, Ruedi; Beckmann, Roland; Hopfner, Karl-Peter.

Cell ; 154(6): 1207-19, 2013 Sep 12.

Article in English | MEDLINE | ID: mdl-24034245

17.

Kinase Interaction Network Expands Functional and Disease Roles of Human Kinases.

Buljan, Marija; Ciuffa, Rodolfo; van Drogen, Audrey; Vichalkovski, Anton; Mehnert, Martin; Rosenberger, George; Lee, Sohyon; Varjosalo, Markku; Pernas, Lucia Espona; Spegg, Vincent; Snijder, Berend; Aebersold, Ruedi; Gstaiger, Matthias.

Mol Cell ; 79(3): 504-520.e9, 2020 08 06.

Article in English | MEDLINE | ID: mdl-32707033

18.

Mass spectrometry-based proteomics and network biology.

Bensimon, Ariel; Heck, Albert J R; Aebersold, Ruedi.

Annu Rev Biochem ; 81: 379-405, 2012.

Article in English | MEDLINE | ID: mdl-22439968

19.

DIP-MS: ultra-deep interaction proteomics for the deconvolution of protein complexes.

Frommelt, Fabian; Fossati, Andrea; Uliana, Federico; Wendt, Fabian; Xue, Peng; Heusel, Moritz; Wollscheid, Bernd; Aebersold, Ruedi; Ciuffa, Rodolfo; Gstaiger, Matthias.

Nat Methods ; 21(4): 635-647, 2024 Apr.

Article in English | MEDLINE | ID: mdl-38532014

20.

Quantitative analysis of fission yeast transcriptomes and proteomes in proliferating and quiescent cells.

Marguerat, Samuel; Schmidt, Alexander; Codlin, Sandra; Chen, Wei; Aebersold, Ruedi; Bähler, Jürg.

Cell ; 151(3): 671-83, 2012 Oct 26.

Article in English | MEDLINE | ID: mdl-23101633

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